Radish Genome Database

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Data resources

Home > Data resources > Genome snapshot

Assembly (Rs1.0) statistics

    Number of chromosome 9
    No. scaffolds 11,389
    Scaffold N50 (bp) 927,251
    No. contigs 38,732
    Contig N50 (bp) 19,614
    Total bases (bp) 426,202,302
    Gap (bp) 54,594,566


Gene statistics

    Number of gene 46,514
    Avr. gene size (bp) 1,754
    Avr. exon size (bp) 238
    Avr. intron size (bp) 147
    No. exons per gene 5
    Longest gene (bp) 203,142
    Longest intron (bp) 200,079


Repeat statistics

    Number of elements Length occupied (bp) Percentage of sequence (%)
    Transposable Elements 520,569 200,199,339 53.9
    Telomere-related sequences 6,094 1,193,236 0.3
    Centromere-related sequences 3,843 718,550 0.2
    RNA gene 9,518 894,067 0.2
    Simple repeat 708,557 43,187,745 11.6
    Low complexity 43,113 2,506,135 0.7
    Unclassified  & Undefined 21,574 7,219,446 1.9
    Total 1,313,268 255,918,518 68.9
    (non-redundant base) - 132,443,114 35.6


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